Javascript in HTML Object works in FF not IE

I have seen several postings about this, but have not seen a clear
answer.

I have some non compiled javascript that is loaded into an HTML object
by using a requestBuilder call to my legacy jsp application.

When clicking on a link in FF the javascript works fine. However, not
is IE.

I have seem recommendations that the javascript needs to be in the
module HTML page. This works, however, does not scale very well.

Two Questions:

1) Why is this working in FF and not IE. Some MAC browsers are also
OK. I must be missing some basic concept.

2) What is the correct approach to having onClicked/ onSelect events
in HTML access non compiled Javascript.

Thanks for your time.

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